PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045155m
Common NameCISIN_1g045155mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 583aa    MW: 66066.8 Da    PI: 5.2784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045155mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12334377755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++  Lr l+P       +Kl+ a+iL  A+eY+k+Lq
  orange1.1g045155m 334 VAERKRRKKLNDRLYALRALVPII-----TKLDRATILVDAIEYVKQLQ 377
                        68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-207154IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.17E-11326373No hitNo description
PROSITE profilePS5088815.682327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16329389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-15333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16334389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.604470548IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MTVVQTLMDR LRPLVGLKGW DYCVLWKLSD DQRFIAWIDC CCAGIEGTQN DDGDELHFPV  60
SPFLPCRDVI FPHPRTKSCE LLSQLPSSMP LDSGIYAQSL ISNQPRWLNF SNSADLEVME  120
ETLWTRVLIP IMGGLIELFA TKEVSEDPHV IDFIIAQCNI SMEQDPMNMN TSCYLDNASS  180
SVNVHAMALE NSDVPYDLSV DRIRICSGCT SPVNFLQQFG YSSSSKNVKR HRNDMFFEGS  240
RDDSTHQNGI QEMDNASNMN MQFMEPNMGN KELQQGNYDD LNKDLIKPDQ NNNNNNNGRS  300
DSISDCSDQI DDLEDDVKYR PRRNGKEPQS KNLVAERKRR KKLNDRLYAL RALVPIITKL  360
DRATILVDAI EYVKQLQKQE KELKEELEEN SDDDGAAKND DMGISVNNHN AVKSESLTQN  420
GTNFGPKTEP KQCHMGNGRK QDQDSGNTID KGQQMEVQVE VAQLNGNEFF IKVFCEHKPG  480
GFVRLMEALN SLGLEVTNAN VTSRTGLVSN VFNVKKRDNE MVQADHVRDS LLELTRNPAR  540
EWIENVAKAS DSTVNNGINY HHHEQHLHSH HMSTHHHHLH HN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335342ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422575.10.0hypothetical protein CICLE_v10030105mg, partial
TrEMBLA0A067FL700.0A0A067FL70_CITSI; Uncharacterized protein
STRINGPOPTR_0009s13860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-131bHLH family protein